Here is a list of publications which are related to the SegMine methodology, its components (the SEGS algorithm, the Biomine system, etc.). and applications.


Mozetič, I., Lavrač, N., Podpečan, V., Kralj Novak, P., Motaln, H., Petek, M., Gruden, K., Toivonen, H., Kulovesi, K. Semantic Subgroup Discovery and Cross-Context Linking for Microarray Data Analysis, In Bisociative Knowledge Discovery (M.R. Berthold, Ed.), Springer (LNAI 7250), pp. 379-389, 2012. [pdf]
Vavpetič, A., Podpečan, V., Meganck, S., Lavrač, N.: Explaining subgroups through ontologies. Proc. 12th Pacific Rim Intl. Conf. on Artificial Intelligence (P. Anthony, M. Ishizuka, D. Lukose, Eds.), Springer (LNAI 7458), pp. 625-636. (2012). [link]
Eronen, L.; Toivonen, H. Biomine: predicting links between biological entities using network models of heterogeneous databases. BMC Bioinformatics, 13, 119 (2012). [pdf]


Podpečan, V.; Lavrač, N.; Mozetič, I.; Kralj Novak, P.; Trajkovski, I.; Langohr, L.; Kulovesi, K.; Toivonen, H.; Petek, M.; Motaln, H.; Gruden, K. SegMine workflows for semantic microar- ray data analysis in Orange4WS. BMC Bioinformatics 12, 416 (2011). [pdf]
Gruden, K., Podpečan, V., Lavrač, N., Mozetič, I., Kralj Novak, P., Langohr, L., Kulovesi, K., Toivonen, H., Petek, M., Motaln, H. SegMine: A tool for semantic microarray data analysis. FEBS (Federation of European Biochemical Societies) and System X Advanced Lecture Course, Program and Abstracts: System Biology: From Molecules to Function, p. 87, Innsbruck, February 26 - March 4 2011.
Podpečan, V.; Zemenova, M.; Lavrač, N. Orange4WS environment for service-oriented data mining. The Computer Journal 55, 82–98 (2012). [link]


Mozetič, I., Lavrač, N., Podpečan, V., Kralj Novak, P., Motaln, H., Petek, M., Gruden, K., Toivonen, H., Kulovesi, K. Bisociative Knowledge Discovery for Microarray Data Analysis, Proc. First Intl. Conf. on Computational Creativity, pp. 190-199, Lisbon, January 7-9, 2010. [pdf]


Lavrač, N., Kralj Novak, P., Mozetič, I., Podpečan, V., Motaln, H., Petek, M., Gruden, K. Semantic Subgroup Discovery: Using Ontologies in Microarray Data Analysis, Proc. 31st Annual Intl. Conf. of the IEEE EMBS, pp. 5613-5616, Minneapolis, MN, September 2-6, 2009. [pdf]
Lavrač, N., Mozetič, I., Podpečan, V., Kralj Novak, P., Motaln, H., Petek, M., Gruden, K. Gene Analytics: Discovery and Contextualization of Enriched Gene Sets. Proc. Workshop on Explorative Analytics of Information Networks at ECML PKDD 2009, pp. 39-49, Bled, Slovenia, September 11, 2009. [pdf]


Trajkovski, I.; Lavrač, N.; Tolar, J. SEGS: Search for enriched gene sets in microarray data. Journal of Biomedical Informatics 41, 588–601 (2008). [pdf]


Trajkovski, I. Functional Interpretation of Gene Expression Data. Ph.D. thesis (Jožef Stefan International Postgraduate School, Ljubljana, Slovenia, 2007). [pdf]
SegMine news
  • SegMine for metabolomics is under development.
  • SegMine for ClowdFlows is under development
  • Version 0.7.2 is out!
  • Web services used in SegMine are now hosted on a powerful new server with plenty of memory and processors.
Authors and institutions